rs565636 chr11:107840966 C>T
- Sequence
gatttcctatgagtcatgtcatcc[C/T]ttctagtctttcaacaccctacag
- ASB in cell types
- K562 (myelogenous leukemia) HAEC (human aortic endothelial cells) CD14+ monocytes
- ASB for transcription factors
- IKZF1_HUMAN KDM1A_HUMAN NCOR1_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.18 | -2.52 | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | 2.01 | -2.28 | 2.00 | n/a | n/a | |||
| NCOR1_HUMAN | 1.55 | -1.43 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | -3.28 | 2.00 | 2.50 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.50 | -0.97 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood