rs565972 chr11:66312316 G>A
- Sequence
agccagggcgctctgggtgggcgg[G/A]actccagggcccccaggggcgtgg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) liver
- ASB for transcription factors
- CTCF_HUMAN HDAC1_HUMAN CTBP1_HUMAN RING2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.16 | 0.75 | 1.34 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.86 | 2.16 | 2.00 | n/a | n/a | |||
| CTBP1_HUMAN | n/a | 2.78 | 2.00 | n/a | n/a | |||
| RING2_HUMAN | n/a | 2.72 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | -1.04 | 1.99 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Thyroid