rs568817 chr1:37692275 C>T
- Sequence
ccgggagtagtagtttgtatagtt[C/T]gcagccggccagggcggagccggg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) foreskin keratinocyte CD14+ monocytes
- ASB for transcription factors
- FOXK2_HUMAN CTCF_HUMAN CREB1_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 0.08 | 2.81 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.61 | 0.51 | 1.32 | n/a | No Hit | |||
| CREB1_HUMAN | 0.59 | 1.02 | 1.55 | n/a | No Hit | |||
| STAT1_HUMAN | -3.21 | 1.73 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood