rs569570 chr17:8994382 C>A
- Sequence
aaaaagagtttgctactcacagtt[C/A]cggagtggaagggacatgccatgc
- ASB in cell types
- neural cell gastroesophageal sphincter HEK293 (embryonic kidney) heart left ventricle
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN PRDM9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.64 | 1.60 | 1.53 | n/a | No Hit | |||
| RAD21_HUMAN | 0.09 | 2.42 | 1.33 | n/a | n/a | |||
| SMC3_HUMAN | -2.34 | 2.56 | 1.00 | n/a | n/a | |||
| PRDM9_HUMAN | n/a | 2.07 | 1.50 | n/a | n/a | |||
| ZBT17_HUMAN | -3.20 | 2.29 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 5