rs569983 chr18:42072657 T>C
- Sequence
gtgatcctcctgcctcagcctccc[T/C]ggtagctaggagtacaggcatgca
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.92 | -0.04 | 1.38 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid