rs570641 chr1:20575442 C>G
- Sequence
cagtagggggcgcactcaccctat[C/G]tcggtggaatgttgtttaaaagga
- ASB in cell types
- 22RV1 (prostate carcinoma) pancreas epithelial cell of prostate MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.47 | 1.33 | 1.43 | n/a | No Hit | |||
| SMC3_HUMAN | -1.69 | 1.51 | 1.33 | n/a | n/a | |||
| STAT1_HUMAN | 2.03 | -2.86 | 2.50 | n/a | No Hit |
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