rs571016 chr1:29181838 C>T
- Sequence
gcgagagcacggcggcagcggcgg[C/T]ggcggcaacgggcgggcggcggga
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- EP400_HUMAN GABPA_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP400_HUMAN | -1.93 | 1.74 | 1.33 | n/a | n/a | |||
| GABPA_HUMAN | 1.77 | -1.46 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.71 | 0.29 | 1.32 | 0.13 | Weak Discordant |
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Motif analysis
