rs57395897 chr19:4868115 C>T
- Sequence
tgggctccgactcagctatatgta[C/T]acacacacacacacacacacacac
- ASB in cell types
- HEK293 (embryonic kidney) VCaP (prostate carcinoma)
- ASB for transcription factors
- ZSCA4_HUMAN FOXA1_HUMAN HIC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZSCA4_HUMAN | 2.52 | n/a | 1.50 | n/a | n/a | |||
| FOXA1_HUMAN | 1.80 | -1.59 | 1.50 | -1.91 | Weak Concordant | |||
| HIC1_HUMAN | 2.40 | -3.45 | 2.00 | n/a | No Hit |
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Motif analysis
