rs573995 chr1:28235345 T>G
- Sequence
gttataatttgggttttctttttt[T/G]tttttttgttttgagacggagtct
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- ATF4_HUMAN ZN394_HUMAN BHE40_HUMAN ZNF24_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF4_HUMAN | -2.20 | 2.01 | 1.33 | n/a | No Hit | |||
| ZN394_HUMAN | n/a | 2.64 | 2.00 | -2.18 | Discordant | |||
| BHE40_HUMAN | -2.01 | 2.25 | 1.33 | n/a | No Hit | |||
| ZNF24_HUMAN | -0.86 | 1.35 | 1.47 | n/a | n/a | |||
| ENL_HUMAN | -1.06 | 1.63 | 1.33 | n/a | n/a |
Items per page:
1 – 5 of 30
Motif analysis
