rs5743562 chr4:38804475 T>C
- Sequence
gctctggaagaaaaccagaagacg[T/C]gtgtgacccaaatattcatttccc
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- SMAD1_HUMAN COE1_HUMAN ATF7_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD1_HUMAN | -1.72 | 1.50 | 1.33 | n/a | n/a | |||
| COE1_HUMAN | 0.14 | 1.44 | 1.42 | n/a | No Hit | |||
| ATF7_HUMAN | -2.30 | 2.11 | 1.33 | n/a | n/a | |||
| TBX21_HUMAN | -1.54 | 1.33 | 1.33 | n/a | No Hit | |||
| BHE40_HUMAN | -1.94 | 1.76 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, fasting insulin, helicobacter pylori seroprevalence, homa-b, homa-ir, obesity with early age of onset (age >2)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood