rs5756111 chr22:36239710 G>A
- Sequence
ggagcagccgcagaccagacatcc[G/A]ggtccctctcatccaacccacctg
- ASB in cell types
- keratinocytes GM12878 (female B-cells)
- ASB for transcription factors
- SNAI2_HUMAN ZN687_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -1.31 | 3.05 | 1.50 | n/a | No Hit | |||
| ZN687_HUMAN | 1.47 | -0.99 | 1.42 | n/a | n/a | |||
| ELF1_HUMAN | 1.73 | 0.03 | 1.33 | -3.36 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Testis