rs576585 chr22:25448054 T>C
- Sequence
tggtgcgcatgcgtgttctcaccg[T/C]agacgctgcgtggcgtgcgtggcg
- ASB in cell types
- MDA-MB-453 (breast adenocarcinoma) GM12878 (female B-cells) CD14+ monocytes Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- STAT1_HUMAN MYC_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -2.96 | 2.07 | 2.50 | n/a | No Hit | |||
| MYC_HUMAN | 2.36 | -3.32 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.98 | -2.68 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Muscle_Skeletal, Nerve_Tibial, Whole_Blood