rs57845622 chr2:20507302 A>G
- Sequence
cacagtcccatcagaatggctcaa[A/G]tgacacacagtgataatatagtca
- ASB in cell types
- GM12878 (female B-cells) K562 (myelogenous leukemia)
- ASB for transcription factors
- BHE40_HUMAN IKZF1_HUMAN RUNX3_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | 1.52 | -1.80 | 1.33 | 3.10 | Discordant | |||
| IKZF1_HUMAN | 1.62 | -0.30 | 1.56 | n/a | No Hit | |||
| RUNX3_HUMAN | 1.89 | -1.55 | 1.33 | n/a | No Hit | |||
| COT1_HUMAN | 1.63 | -1.65 | 1.33 | n/a | No Hit | |||
| PO2F2_HUMAN | 1.49 | n/a | 1.33 | n/a | No Hit |
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Motif analysis
