rs57919173 chr1:174159856 A>G
- Sequence
aggactgtcggccgcctcccggac[A/G]ccgcagttctcccaggtggccgct
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- KDM1A_HUMAN RING2_HUMAN COT1_HUMAN LMBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | 2.36 | n/a | 3.00 | n/a | n/a | |||
| RING2_HUMAN | 3.05 | n/a | 3.00 | n/a | n/a | |||
| COT1_HUMAN | 1.65 | -0.49 | 2.17 | n/a | No Hit | |||
| LMBL2_HUMAN | 1.91 | -0.59 | 2.17 | n/a | n/a | |||
| IKZF1_HUMAN | 1.26 | -0.50 | 2.17 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood