rs579728 chr1:60620255 G>A
- Sequence
ctctcagaaacattatgtacttta[G/A]gcttcctctcaggaagttcggatt
- ASB in cell types
- VCaP (prostate carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| VCaP (prostate carcinoma) | -0.12 | 0.62 | 2.02 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellum, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid