rs579947 chr1:109241026 T>C
- Sequence
gacattgcccttttaagagccctc[T/C]ccggcggggccaacctgtaatccc
- ASB in cell types
- K562 (myelogenous leukemia) keratinocytes MCF7 (Invasive ductal breast carcinoma) liver
- ASB for transcription factors
- SNAI2_HUMAN FOXM1_HUMAN VEZF1_HUMAN HDAC1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.03 | n/a | 1.50 | n/a | No Hit | |||
| FOXM1_HUMAN | -2.37 | 2.28 | 1.33 | n/a | No Hit | |||
| VEZF1_HUMAN | n/a | 2.30 | 1.50 | n/a | No Hit | |||
| HDAC1_HUMAN | -2.13 | 1.84 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Spleen, Testis, Whole_Blood