rs580077 chr11:75385940 T>C
- Sequence
attacaggtgtgagtcaccgtgcc[T/C]ggccaggaagtaaatttcaatggg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) primary endothelial colony-forming cells
- ASB for transcription factors
- TAL1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TAL1_HUMAN | 1.72 | -1.40 | 1.50 | n/a | No Hit | |||
| ESR1_HUMAN | -0.55 | 1.02 | 1.69 | 2.81 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Colon_Sigmoid, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Pancreas, Spleen, Thyroid