rs580441 chr1:39799406 T>C
- Sequence
gcatgaatcctcacaccgtctcac[T/C]aggggcgctctccccgtttcacca
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- IKZF1_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.59 | -3.26 | 1.33 | n/a | No Hit | |||
| MEF2B_HUMAN | 2.57 | n/a | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood