rs580907 chr19:48876609 A>G
- Sequence
ttttgctactgctatctagagggc[A/G]gagccaggtgcacagagtggaaca
- ASB in cell types
- GM12878 (female B-cells)
- ASB for transcription factors
- BACH1_HUMAN FOXK2_HUMAN IKZF1_HUMAN COT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BACH1_HUMAN | 2.06 | -2.30 | 1.33 | 0.72 | Weak Discordant | |||
| FOXK2_HUMAN | 1.67 | -1.56 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | 1.20 | -0.69 | 1.33 | n/a | No Hit | |||
| COT1_HUMAN | 1.56 | -1.58 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood