rs58171120 chr16:85688954 C>G
- Sequence
gtctcctcgggcccctcagcgtcc[C/G]ggaggagacgccgcggccgccgtt
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) HCT-116 (colon carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- ZFX_HUMAN ZN335_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 1.64 | 0.47 | 2.00 | n/a | No Hit | |||
| ZN335_HUMAN | n/a | 2.24 | 2.00 | n/a | No Hit | |||
| SP1_HUMAN | 0.97 | -0.56 | 1.92 | 3.23 | Discordant |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Testis, Thyroid