rs581886 chr1:57301423 A>C
- Sequence
ccataccagccaggtgaggggagg[A/C]aggcttactgtgtttatttgcttt
- ASB in cell types
- VCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ERG_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.09 | 1.29 | 2.00 | n/a | No Hit | |||
| ERG_HUMAN | -0.60 | 1.06 | 2.00 | -4.05 | Discordant | |||
| ANDR_HUMAN | 0.39 | 1.08 | 1.85 | n/a | No Hit |
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Motif analysis
