rs583242 chr18:56651625 T>G
- Sequence
atgggaaaccacagggcgggatgt[T/G]cctgcaccgtggaggtcaggggtc
- ASB in cell types
- liver breast tumor tissue
- ASB for transcription factors
- FOXK2_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 1.65 | -1.36 | 1.33 | n/a | n/a | |||
| ESR1_HUMAN | 1.24 | n/a | 2.50 | -0.83 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Thyroid