rs583443 chr6:73580568 A>G
- Sequence
ttctctctgcagtcacgcagaaat[A/G]gttgctccactagtcatcttcttt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma) HAEC (human aortic endothelial cells)
- ASB for transcription factors
- FOS_HUMAN JUN_HUMAN EP300_HUMAN AHR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | 1.80 | -0.65 | 1.62 | n/a | n/a | |||
| JUN_HUMAN | 1.55 | 0.31 | 1.28 | n/a | No Hit | |||
| EP300_HUMAN | 0.97 | 0.34 | 1.26 | n/a | n/a | |||
| AHR_HUMAN | 1.67 | 0.13 | 1.50 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.85 | 1.82 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood