rs585022 chr6:149432168 C>T
- Sequence
aggtcaatgcttgttgtgctacaa[C/T]ggcgccacctaatggttggtgctg
- ASB in cell types
- A549 (lung carcinoma) cranial neural crest cells normal lung fibroblasts gastrocnemius medialis
- ASB for transcription factors
- RAD21_HUMAN COT1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.10 | 0.60 | 1.25 | n/a | n/a | |||
| COT1_HUMAN | 2.91 | -0.49 | 1.67 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.72 | -2.05 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood