rs58532407 chr1:44731029 T>C
- Sequence
cctcgcaacaaacacacaactttc[T/C]atctgatttttaaacaccgttgat
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney) K562 (myelogenous leukemia)
- ASB for transcription factors
- SMAD5_HUMAN PML_HUMAN ZMIZ1_HUMAN KDM5B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD5_HUMAN | 2.34 | -1.29 | 1.42 | n/a | n/a | |||
| PML_HUMAN | 2.31 | -2.23 | 1.83 | n/a | n/a | |||
| ZMIZ1_HUMAN | 2.67 | -3.29 | 1.50 | n/a | n/a | |||
| KDM5B_HUMAN | 2.18 | -1.94 | 1.50 | n/a | n/a | |||
| SIN3A_HUMAN | 2.02 | -2.87 | 1.61 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid