rs585995 chr8:60652257 A>G
- Sequence
gacgccggggccagcacgcgggtc[A/G]cgaacgctcagcctgcggggccgc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) neural cell HEK293T (embryonic kidney)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN COT1_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.05 | 0.92 | 1.75 | n/a | No Hit | |||
| BCL3_HUMAN | -0.21 | 1.16 | 1.64 | n/a | n/a | |||
| COT1_HUMAN | 1.20 | -0.10 | 1.67 | n/a | No Hit | |||
| SMC3_HUMAN | 0.02 | 1.53 | 1.67 | n/a | n/a | |||
| ZFHX2_HUMAN | 1.70 | n/a | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood