rs58602839 chr6:166313485 G>C
- Sequence
gcttccctccatgccggggggggg[G/C]ggtcccaatttctttggtctcaag
- ASB in cell types
- K562 (myelogenous leukemia) adrenal gland pancreas esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN MGAP_HUMAN MNT_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.37 | 2.09 | 1.37 | 3.89 | Concordant | |||
| MGAP_HUMAN | n/a | 1.20 | 1.33 | n/a | n/a | |||
| MNT_HUMAN | 0.11 | 1.69 | 1.50 | n/a | n/a | |||
| REST_HUMAN | -1.63 | 1.42 | 1.33 | n/a | No Hit | |||
| LMBL2_HUMAN | -0.81 | 0.81 | 1.00 | n/a | n/a |
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Motif analysis
