rs58603818 chr1:44731001 C>T
- Sequence
aaatgttcaaacaaaatgttgtct[C/T]acacctcgcaacaaacacacaact
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMAD5_HUMAN BHE40_HUMAN MAF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.37 | 0.70 | 1.24 | n/a | No Hit | |||
| SMAD5_HUMAN | 1.72 | 0.00 | 1.42 | n/a | n/a | |||
| BHE40_HUMAN | -0.33 | 1.25 | 1.42 | n/a | No Hit | |||
| MAF_HUMAN | 1.31 | n/a | 2.50 | n/a | No Hit | |||
| PML_HUMAN | 1.45 | -0.62 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid