rs58900521 chr16:18790709 G>A
- Sequence
ctacagagatgcgccaccacgccc[G/A]gctaatttttgtatttttagtaga
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- SMCE1_HUMAN HDAC1_HUMAN MNT_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCE1_HUMAN | n/a | 2.32 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -1.07 | 1.52 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -1.18 | 1.29 | 2.25 | n/a | n/a | |||
| KDM1A_HUMAN | -1.12 | 1.90 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood