rs589852 chr11:64489968 C>T
- Sequence
actccctgcgggacacgcatgcgc[C/T]tctatcctgcttgaccacgtgggg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) DOHH2 (diffuse large B-cell lymphoma) CD14+ monocytes
- ASB for transcription factors
- RFX1_HUMAN CTCF_HUMAN NRF1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | n/a | 1.05 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.81 | 0.73 | 1.53 | n/a | No Hit | |||
| NRF1_HUMAN | -0.05 | 1.93 | 1.79 | 0.23 | Weak Concordant | |||
| MNT_HUMAN | -0.68 | 2.07 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | 1.18 | 0.13 | 1.95 | n/a | n/a |
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Motif analysis
