rs590097 chr2:111176530 T>G
- Sequence
tcaaggtgagtggaggacagagtg[T/G]gctgtagggcccaaggccaaggcc
- ASB in cell types
- liver HepG2 (hepatoblastoma) SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- RARA_HUMAN RXRA_HUMAN HNF4A_HUMAN ERR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 3.24 | n/a | 2.00 | n/a | No Hit | |||
| RXRA_HUMAN | 2.48 | -2.38 | 1.33 | n/a | No Hit | |||
| HNF4A_HUMAN | 2.26 | -2.46 | 1.33 | n/a | No Hit | |||
| ERR1_HUMAN | 2.07 | -2.87 | 1.50 | n/a | No Hit | |||
| SP1_HUMAN | 2.15 | -0.32 | 1.56 | n/a | No Hit |
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