rs592866 chr10:6163959 A>T
- Sequence
gtttccggcaaaggatgttttccg[A/T]gaaggcctgggagcggctgtaaat
- ASB in cell types
- K562 (myelogenous leukemia) keratinocytes CD14+ monocytes LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN STAT1_HUMAN GABPA_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 2.36 | 6.00 | n/a | No Hit | |||
| STAT1_HUMAN | -3.44 | 2.10 | 2.50 | -1.45 | Weak Discordant | |||
| GABPA_HUMAN | 1.58 | -1.02 | 1.50 | n/a | No Hit | |||
| GABP1_HUMAN | 0.75 | n/a | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | 1.96 | -1.81 | 2.00 | n/a | No Hit |
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Motif analysis
