rs593394 chr11:64779519 C>T
- Sequence
agcactttgacaggccgaggcggg[C/T]gaatcacaaggtcagaaggtcgag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- NR2C1_HUMAN MNT_HUMAN ATF3_HUMAN NCOR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | -0.74 | 1.97 | 1.78 | n/a | No Hit | |||
| MNT_HUMAN | -0.58 | 1.84 | 2.00 | n/a | n/a | |||
| ATF3_HUMAN | -0.68 | 2.01 | 2.00 | n/a | No Hit | |||
| NCOR1_HUMAN | -1.55 | 1.82 | 2.00 | n/a | n/a | |||
| REQU_HUMAN | -0.05 | 1.70 | 1.78 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Esophagus_Gastroesophageal_Junction, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood