rs593532 chr6:53465054 T>C
- Sequence
gggtgtgcttggaagctcaaggga[T/C]ggcaaggagcccagtgtgacctga
- ASB in cell types
- A549 (lung carcinoma) MDA-MB-453 (breast adenocarcinoma) T47D (invasive ductal carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- GATA3_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA3_HUMAN | 2.10 | 0.47 | 1.72 | n/a | No Hit | |||
| ANDR_HUMAN | 1.37 | -1.06 | 1.78 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, ldl cholesterol, major depressive disorder (broad definition), major depressive disorder (broad definition) (females), major depressive disorder (broad definition) (males), major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), microalbuminuria, systolic blood pressure (sbp), triglycerides change with statins, urinary albumin-to-creatinine ratio