rs594466 chr3:27320578 C>T
- Sequence
ttatacatgacccaaactgaattg[C/T]gataagcagctcagaaatgcatgg
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.34 | -0.23 | 1.48 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.73 | -0.70 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP childhood acute lymphoblastic leukemia, chronic kidney disease, diabetic retinopathy in type 2 diabetes mellitus, diastolic blood pressure (dbp), height, ldl cholesterol, systolic blood pressure (sbp), total cholesterol
GTEx eQTL Artery_Aorta, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis