rs595516 chr19:48875051 A>G
- Sequence
ggcgattctcgtgcctcagcctcc[A/G]gagtatctgggattacaggcgcat
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- ZBT8A_HUMAN IKZF2_HUMAN ZN335_HUMAN ZN491_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT8A_HUMAN | 0.85 | n/a | 1.33 | n/a | n/a | |||
| IKZF2_HUMAN | -0.77 | 1.20 | 1.33 | n/a | n/a | |||
| ZN335_HUMAN | n/a | 2.27 | 2.00 | n/a | No Hit | |||
| ZN491_HUMAN | -2.52 | 2.15 | 1.50 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood