rs598505 chr12:52534665 T>G
- Sequence
tgtatagagtcacgtggacctgat[T/G]ctgccaccttctggctgcgtcacc
- ASB in cell types
- LNCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) GM23338
- ASB for transcription factors
- CTCF_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.58 | 2.10 | 1.52 | 2.24 | Concordant | |||
| GATA3_HUMAN | -0.48 | 1.86 | 1.67 | n/a | No Hit |
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Motif analysis
