rs598557 chr12:52534709 C>T
- Sequence
tcacctggggcaagttatttaacg[C/T]ctctaagcctcaggttccccatct
- ASB in cell types
- LNCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) GM23338
- ASB for transcription factors
- CTCF_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -1.12 | 2.07 | 1.55 | n/a | No Hit | |||
| GATA3_HUMAN | -0.33 | 2.22 | 1.83 | n/a | No Hit |
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