ADASTRA v1.6.10
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adastra.autosome.org
rs598606
chr12:52534738
T
>
A
Sequence
aagcctcaggttccccatctgtaa[T/A]ctgaagccctggcctagtagatct
ASB in cell types
LNCaP C4-2B (prostate carcinoma)
LNCaP (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN
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Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
-0.74
2.39
1.00
4.8·10
-11
1.20
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
fasting insulin
,
homa-ir
,
ldl cholesterol
,
total cholesterol
,
triglycerides
GTEx eQTL
Adipose_Visceral_Omentum
,
Esophagus_Mucosa
,
Pancreas
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)