rs5999125 chr22:33867337 G>A
- Sequence
ttgcacacatgccctctgccttct[G/A]ttctggactctgctctgactcatc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HT29 (colon adenocarcinoma)
- ASB for transcription factors
- PPARG_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PPARG_HUMAN | -2.62 | 2.19 | 1.50 | 3.33 | Concordant | |||
| FOXA1_HUMAN | -0.02 | 0.90 | 1.48 | n/a | No Hit |
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Motif analysis
