rs60087251 chr8:85290294 A>C
- Sequence
ttcgcgcatctctcctctgagtaa[A/C]atcttctgctgccatcatctggac
- ASB in cell types
- neural cell foreskin keratinocyte
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.09 | 0.48 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.81 | 0.60 | 1.54 | 3.59 | Discordant | |||
| SMC3_HUMAN | 2.03 | 0.85 | 1.67 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood