rs6012580 chr20:49009415 A>C
- Sequence
aatgagtcgaggtcgctctactgc[A/C]ttccagcctgggcaacagagcaag
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- RARA_HUMAN TEAD1_HUMAN SOX13_HUMAN TFE3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 2.35 | -2.71 | 1.33 | n/a | No Hit | |||
| TEAD1_HUMAN | 2.38 | -2.80 | 1.50 | -8.24 | Concordant | |||
| SOX13_HUMAN | 1.60 | -1.87 | 1.33 | n/a | n/a | |||
| TFE3_HUMAN | 1.97 | -2.21 | 1.33 | n/a | No Hit | |||
| SMAD4_HUMAN | 1.79 | -1.43 | 1.33 | n/a | No Hit |
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Motif analysis
