rs6019349 chr20:48658707 A>G
- Sequence
tagtgcgggaggccaactataaac[A/G]aataaacaaaagaaatacaggatg
- ASB in cell types
- VCaP (prostate carcinoma) LHSAR (prostate epithelial cells) CWR22 (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN ERG_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 0.21 | 2.29 | 2.08 | -5.02 | Discordant | |||
| FOXA1_HUMAN | 0.63 | 2.69 | 3.10 | -4.90 | Discordant | |||
| ERG_HUMAN | -1.31 | 1.88 | 1.33 | n/a | No Hit |
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Motif analysis
