rs6019860 chr20:49475527 A>G
- Sequence
tcaagtgcttcccatcctgatgac[A/G]ttatcaagtacaggaagtacacaa
- ASB in cell types
- HepG2 (hepatoblastoma) hMADS-3 (adipose-derived stem cells)
- ASB for transcription factors
- ATF2_HUMAN ATF7_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | n/a | 3.92 | 1.00 | 6.26 | Concordant | |||
| ATF7_HUMAN | -2.84 | 2.45 | 1.33 | n/a | n/a | |||
| PPARG_HUMAN | 1.24 | -0.66 | 1.22 | n/a | No Hit |
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Motif analysis
