rs6049290 chr20:2470858 C>T
- Sequence
agctcactagccctggagttccgg[C/T]cccggagcggagcttctgccgagc
- ASB in cell types
- breast tumor tissue LNCaP C4-2B (prostate carcinoma) CD4+ T-cells upper lobe of left lung
- ASB for transcription factors
- ESR1_HUMAN ZFX_HUMAN GABPA_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.74 | n/a | 2.00 | n/a | No Hit | |||
| ZFX_HUMAN | -0.82 | 1.50 | 1.67 | n/a | No Hit | |||
| GABPA_HUMAN | -1.32 | 1.10 | 1.42 | 0.16 | Weak Concordant | |||
| CTCF_HUMAN | 0.83 | 0.46 | 1.10 | n/a | No Hit | |||
| BCL6_HUMAN | 1.73 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Mucosa, Lung, Spleen, Thyroid, Whole_Blood