rs606660 chr6:152897757 A>G
- Sequence
ttcataaacaaaaaagagtgatct[A/G]aaggttttcccaagttattttaga
- ASB in cell types
- LNCaP (prostate carcinoma) K562 (myelogenous leukemia)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| LNCaP (prostate carcinoma) | -0.71 | 1.12 | 1.00 | |||
| K562 (myelogenous leukemia) | 0.37 | 0.22 | 1.29 |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, ldl cholesterol, major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood