rs606671 chr11:114400485 T>C
- Sequence
ggaagagccagaagccgccttgcc[T/C]ttaacgaggggtatcctggcgagc
- ASB in cell types
- HEK293T (embryonic kidney) HEK293 (embryonic kidney) CD14+ monocytes breast tumor tissue
- ASB for transcription factors
- STAT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.33 | n/a | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | 1.41 | n/a | 2.50 | 2.44 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg