rs60803530 chr1:167600211 C>T
- Sequence
gcctttctccagagttcaaaggtg[C/T]gttgtgctcctgacacatgagggc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) transverse colon
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN ATF3_HUMAN ARNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.30 | 1.58 | 1.93 | n/a | n/a | |||
| SMC3_HUMAN | -0.35 | 1.21 | 1.97 | n/a | n/a | |||
| ATF3_HUMAN | n/a | 2.71 | 3.00 | n/a | No Hit | |||
| ARNT_HUMAN | -3.84 | 1.77 | 2.67 | n/a | No Hit | |||
| ZNF24_HUMAN | -3.22 | 1.63 | 2.75 | n/a | n/a |
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