rs60811587 chr6:42104228 A>G
- Sequence
cctgacctctgggatctagcgggc[A/G]ggagagagacagacgagaggagct
- ASB in cell types
- K562 (myelogenous leukemia) erythroid cells foreskin keratinocyte
- ASB for transcription factors
- PRD10_HUMAN HDAC1_HUMAN MNT_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | n/a | 2.91 | 3.00 | n/a | n/a | |||
| HDAC1_HUMAN | -1.03 | 2.23 | 3.00 | n/a | n/a | |||
| MNT_HUMAN | n/a | 1.90 | 3.00 | n/a | n/a | |||
| SMCA4_HUMAN | n/a | 2.10 | 3.00 | n/a | n/a | |||
| REST_HUMAN | n/a | 2.90 | 3.00 | -0.27 | Weak Discordant |
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Motif analysis
