rs608793 chr11:119115949 C>T
- Sequence
ctgggccacgggactgatcctgtc[C/T]acatcctctttccctccattctcc
- ASB in cell types
- K562 (myelogenous leukemia) periferal blood macrophages monocyte-derived macrophages
- ASB for transcription factors
- SPI1_HUMAN NRF1_HUMAN MGAP_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.52 | -1.43 | 2.17 | -2.90 | Concordant | |||
| NRF1_HUMAN | -2.26 | 2.33 | 2.00 | n/a | No Hit | |||
| MGAP_HUMAN | -3.20 | 2.29 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood